Introduction
============
The purpose of the pipeline is to search large amounts of metagenomic data using
HMMER3 to utilize the specificity/sensitivity of using a Hidden Markov Model in the search for novel 
*qnr* antibiotic resistance genes.

Figure. An overview of the pipeline layout and submodules.

.. image:: img/qnrpipeline_overview.*
   :scale: 66 %
   :alt: An overview schematic representation of the pipeline